Gal4 System   |   Targeted DamID   |   Chromatin TaDa   |   RNA DamID   | MAMMALIAN TADA |   PROTOCOLS & PIPELINES

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Protocols & Pipelines

The protocol and pipeline for Targeted DamID and other adaptations are described in the following publications:

Cell type-specific profiling of gene expression and chromatin binding without cell isolation: Assaying RNA Pol II occupancy in neural stem cells 
Southall TD, Gold KS, Egger B, Davidson CM, Caygill EE, Marshall OJ and Brand AH (2013) Developmental Cell


damidseq_pipeline: an automated pipeline for processing DamID sequencing datasets 
Marshall OJ and Brand AH (2015) Bioinformatics


Cell-type-specific profiling of protein-DNA interactions without cell isolation using targeted DamID with next-generation sequencing
Marshall OJ, Southall TD, Cheetham SW and Brand AH (2016) Nature Protocols