Gal4 System | Targeted DamID | Chromatin TaDa | RNA DamID | MAMMALIAN TADA | PROTOCOLS & PIPELINES
Protocols & Pipelines
The protocol and pipeline for Targeted DamID and other adaptations are described in the following publications:
Cell type-specific profiling of gene expression and chromatin binding without cell isolation: Assaying RNA Pol II occupancy in neural stem cells
Southall TD, Gold KS, Egger B, Davidson CM, Caygill EE, Marshall OJ and Brand AH (2013) Developmental Cell
damidseq_pipeline: an automated pipeline for processing DamID sequencing datasets
Marshall OJ and Brand AH (2015) Bioinformatics
Cell-type-specific profiling of protein-DNA interactions without cell isolation using targeted DamID with next-generation sequencing
Marshall OJ, Southall TD, Cheetham SW and Brand AH (2016) Nature Protocols